Package org.schwiebert.abl4j.align.methods

Interface Summary

AlignmentMethod

An AlignmentMethod.

Class Summary

AbstractAdvancedMethod	Base class of "advanced" alignment methods.
AllAlignmentsMethod	Implements the "all"-alignment of ABL
LeftAlignmentMethod	Implements the "left"-alignment of ABL
LeftAndRightAlignmentMethod	Implements the "both"-alignment of ABL
RightAlignmentMethod	Implements the "right"-alignment of ABL
SuffixTreeAlignment	Will probably implement the "suffix tree"-alignment of ABL some day.
WagnerFisherAlignmentMethod	Base class of Wagner-Fisher alignments.
WagnerFisherBiasedAlignmentMethod	Implements the "wf biased" alignment method of ABL.
WagnerFisherDefaultAlignmentMethod	Implements the "wf default" alignment method of ABL.