Uses of Interface
org.schwiebert.abl4j.align.methods.AlignmentMethod

Packages that use AlignmentMethod

org.schwiebert.abl4j.align
org.schwiebert.abl4j.align.methods
org.schwiebert.abl4j.examples

Uses of AlignmentMethod in org.schwiebert.abl4j.align

Fields in org.schwiebert.abl4j.align declared as AlignmentMethod

private AlignmentMethod

Align.alignmentMethod The alignment method used for the alignment

Uses of AlignmentMethod in org.schwiebert.abl4j.align.methods

Classes in org.schwiebert.abl4j.align.methods that implement AlignmentMethod

class	AbstractAdvancedMethod Base class of "advanced" alignment methods.
class	AllAlignmentsMethod Implements the "all"-alignment of ABL
class	LeftAlignmentMethod Implements the "left"-alignment of ABL
class	LeftAndRightAlignmentMethod Implements the "both"-alignment of ABL
class	RightAlignmentMethod Implements the "right"-alignment of ABL
class	SuffixTreeAlignment Will probably implement the "suffix tree"-alignment of ABL some day.
class	WagnerFisherAlignmentMethod Base class of Wagner-Fisher alignments.
class	WagnerFisherBiasedAlignmentMethod Implements the "wf biased" alignment method of ABL.
class	WagnerFisherDefaultAlignmentMethod Implements the "wf default" alignment method of ABL.

Fields in org.schwiebert.abl4j.align.methods declared as AlignmentMethod

private AlignmentMethod	LeftAndRightAlignmentMethod.left
private AlignmentMethod	LeftAndRightAlignmentMethod.right

Uses of AlignmentMethod in org.schwiebert.abl4j.examples

Classes in org.schwiebert.abl4j.examples that implement AlignmentMethod

class

DemoAlignMethod