org.schwiebert.abl4j.align
Enum AlignType

java.lang.Object
  java.lang.Enum<AlignType>
      org.schwiebert.abl4j.align.AlignType

All Implemented Interfaces:

Serializable, Comparable<AlignType>

public enum AlignType
extends Enum<AlignType>

All alignment types of the original ABL implementation.

Enum Constant Summary

AA
All Alignments

B
Both

L
Left

R
Right

ST1
Suffix Tree Variant 1, not implemented

ST2
Suffix Tree Variant 2, not implemented

ST3
Suffix Tree Variant 3, not implemented

ST4
Suffix Tree Variant 4, not implemented

UNDEF

WB
Wagner-Fisher (biased)

WM
Wagner-Fisher (default)

Method Summary

static AlignType	valueOf(String name) Returns the enum constant of this type with the specified name.
static AlignType[]	values() Returns an array containing the constants of this enum type, in the order they're declared.

Methods inherited from class java.lang.Enum

clone, compareTo, equals, getDeclaringClass, hashCode, name, ordinal, toString, valueOf

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Enum Constant Detail

UNDEF

public static final AlignType UNDEF

WM

public static final AlignType WM

Wagner-Fisher (default)

WB

public static final AlignType WB

Wagner-Fisher (biased)

AA

public static final AlignType AA

All Alignments

L

public static final AlignType L

Left

R

public static final AlignType R

Right

B

public static final AlignType B

Both

ST1

public static final AlignType ST1

Suffix Tree Variant 1, not implemented

ST2

public static final AlignType ST2

Suffix Tree Variant 2, not implemented

ST3

public static final AlignType ST3

Suffix Tree Variant 3, not implemented

ST4

public static final AlignType ST4

Suffix Tree Variant 4, not implemented

Method Detail

values

public static final AlignType[] values()

Returns an array containing the constants of this enum type, in the order they're declared. This method may be used to iterate over the constants as follows:

for(AlignType c : AlignType.values())
        System.out.println(c);

Returns:

an array containing the constants of this enum type, in the order they're declared

valueOf

public static AlignType valueOf(String name)

Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:

name - the name of the enum constant to be returned.

Returns:

the enum constant with the specified name

Throws:

IllegalArgumentException - if this enum type has no constant with the specified name